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<title>vennseq.pl</title>
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	<li><a href="#synopsis">SYNOPSIS</a></li>
	<li><a href="#description">DESCRIPTION</a></li>
	<li><a href="#arguments">ARGUMENTS</a></li>
	<li><a href="#requirements">REQUIREMENTS</a></li>
	<li><a href="#author">AUTHOR</a></li>
	<li><a href="#history">HISTORY</a></li>
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<h1><a name="synopsis">SYNOPSIS</a></h1>
<pre>
    vennseq.pl -i InputFastaFile.fasta -o OutputFile -d FeatureFileDir</pre>
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<h1><a name="description">DESCRIPTION</a></h1>
<p>Creates a Venn Diagram comparing the overlap of sequence
features along a query sequence. The purpose is to allow
me to visualize the overlap of Repeat Databases or gene
models along a BAC.</p>
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<h1><a name="arguments">ARGUMENTS</a></h1>
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<dt><strong><a name="item_%2di_inputfastafile">-i InputFastaFile</a></strong><br />
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<dt><strong><a name="item_%2do_outputfile">-o OutputFile</a></strong><br />
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<dt><strong><a name="item_%2dd_featurefiledir">-d FeatureFileDir</a></strong><br />
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<h1><a name="requirements">REQUIREMENTS</a></h1>
<p>Requires the VennMaster program <a href="http://www.informatik.uni-ulm.de/ni/staff/HKestler/vennm/doc.html">http://www.informatik.uni-ulm.de/ni/staff/HKestler/vennm/doc.html</a>.</p>
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<h1><a name="author">AUTHOR</a></h1>
<p>James C. Estill &lt;JamesEstill at gmail.com&gt;</p>
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<h1><a name="history">HISTORY</a></h1>
<p>Started: 03/06/2007</p>
<p>Updated: 05/21/2007</p>

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